Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs35822589 | chr14:23190049 | T/C | 1.47E-6 | 487 | 15.23 | 17.13 | 21.67 | KM Plot |
| THCA | rs35828440 | chr1:91849488 | AT/A | 3.19E-5 | 489 | 15.33 | 17 | 15.63 | KM Plot |
| THCA | rs35853963 | chr14:36326507 | GTA/G | 1.28E-5 | 481 | 15.97 | 15.08 | 14.4 | KM Plot |
| THCA | rs35868990 | chr12:69605099 | AC/A | 0 | 480 | 16.02 | 15 | 7.77 | KM Plot |
| THCA | rs35873137 | chr2:224603522 | G/GA | 0.000122 | 472 | 16.02 | 16.85 | 15.33 | KM Plot |
| THCA | rs35904107 | chr3:14566622 | G/A | 0.000121 | 490 | 16.4 | 15 | 16.52 | KM Plot |
| THCA | rs35925348 | chr3:14570867 | A/G | 1.44E-6 | 489 | 16.67 | 15 | 14.2 | KM Plot |
| THCA | rs35925484 | chr8:144625088 | CA/C | 0.000323 | 474 | 15.43 | 16.53 | 14.55 | KM Plot |
| THCA | rs35926313 | chr7:64254462 | G/T | 1.02E-7 | 488 | 16.63 | 14.33 | 14.27 | KM Plot |
| THCA | rs35931162 | chr3:14570497 | G/A | 1.44E-6 | 489 | 16.67 | 15 | 14.2 | KM Plot |
| THCA | rs35945003 | chr1:22449169 | A/AG | 1.89E-8 | 484 | 15.67 | 17.93 | 9.47 | KM Plot |
| THCA | rs35945512 | chr4:88201535 | GA/G | 0.000283 | 486 | 16.02 | 16.32 | 11.33 | KM Plot |
| THCA | rs35947054 | chr21:37465732 | TG/T | 0.000115 | 484 | 16.63 | 14.43 | 9.73 | KM Plot |
| THCA | rs35948270 | chr19:49352242 | G/A | 8.73E-5 | 480 | 15.93 | 16.63 | 17.77 | KM Plot |
| THCA | rs35953899 | chr1:22384077 | ATG/A | 4.14E-8 | 489 | 15.3 | 17.68 | 9.47 | KM Plot |